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SBSP 2021 Hybrid Congress: Special Issue dedicated to 75th anniversary of Fazly Ataullakhanov
SBPReports; 2021; 2 (1), 23-32
DOI: 10.52455/sbpr.02.202101
Published
August 15, 2021
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The Conference will provide an interdisciplinary platform for discussing problems in systems biology and systems physiology. The SBSP 2021 Congress is devoted to the 75th anniversary of Professor Dr. Fazly Ataullakhanov, featuring the Jubilee section devoted to Dr. Ataullakhanov's path in modern biological science.


Keywords: Molecular machines, Cellular metabolism and energy, Single-molecule biophysics, Systems Biology, Systems Physiology, Experimental Techniques in Bio-Medicine.

Cell division and molecular motors

The ratio of Tpm α- and β-chains in the thin filament affects the actin-myosin interaction

Salavat Nabiev
Salavat Nabiev
Mr.
Сorrespondence:[email protected]
1
Institute of Immunology and Physiology UB RAS; Ekaterinburg; Russia
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Larissa Nikitina
Larissa Nikitina
1
Institute of Immunology and Physiology UB RAS; Ekaterinburg; Russia
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Oksana Gerzen
Oksana Gerzen
1
Institute of Immunology and Physiology UB RAS; Ekaterinburg; Russia
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Daniil Shchepkin
Daniil Shchepkin
1
Institute of Immunology and Physiology UB RAS; Ekaterinburg; Russia
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Sergey Bershitsky
Sergey Bershitsky
1
Institute of Immunology and Physiology UB RAS; Ekaterinburg; Russia
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#myosin#actin
250
Biological systems at the supracellular level: hemostasis, immunity and neurobiology

Elevated shear rate is not specific to arterial thrombosis, but also relevant to hemostasis

Alexandra Yakusheva
Alexandra Yakusheva
Сorrespondence:[email protected]
1
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
2
Université de Strasbourg, INSERM, Strasbourg, France
3
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
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,
Kirill Butov
Kirill Butov
1
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
2
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
3
Histology Department, Pirogov Russian National Research Medical University, Ministry of Healthcare of the Russian Federation, Moscow, Russia
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Mikhail Panteleev
Mikhail Panteleev
1
Lomonosov Moscow State University, Physics Faculty 119991, Leninskiye Gory 1-2, Moscow, Russia
2
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
3
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
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Pierre Mangin
Pierre Mangin
1
Université de Strasbourg, INSERM, Strasbourg, France
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#murine models#hemostasis#thrombosis#thrombus formation#rodent models
208
Methodological issues in systems biology and systems physiology

A possible mechanism of ligand-receptor binding of short peptides to NaV1.8 channels: a novel approach to development of safe and effective analgesics

Ilia Rogachevskii
Ilia Rogachevskii
Сorrespondence:[email protected]
1
Pavlov Institute of Physiology, Russian Academy of Sciences
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Valentina Penniyaynen
Valentina Penniyaynen
1
Pavlov Institute of Physiology, Russian Academy of Sciences
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,
Boris Krylov
Boris Krylov
1
Pavlov Institute of Physiology, Russian Academy of Sciences
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,
Vera Plakhova
Vera Plakhova
1
Pavlov Institute of Physiology, Russian Academy of Sciences
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#patch-clamp#ion channel#ligand-receptor binding#neuron
216
Cell division and molecular motors

The Tip of a Growing Microtubule and its Implications for Polymer Dynamics

Richard McIntosh
Richard McIntosh
Сorrespondence:[email protected]
1
Dept. of Molecular, Cellular, and Developmental Biology, University of Colorado
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#microtubules#tubulin#electron tomography#Brownian dynamics
233
Methodological issues in systems biology and systems physiology

Microgravity-induced bone loss: lessons learned from systematic reviews and meta-analysis

Svetlana Komarova
Svetlana Komarova
1
McGill University; Montreal; Canada
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#bones#microgravity#meta-analysis#systematic review
191
Biological systems at the supracellular level: hemostasis, immunity and neurobiology

Новый взгляд на контракцию (ретракцию) сгустков крови и тромбов

Rustem Litvinov
Rustem Litvinov
Сorrespondence:[email protected]
1
University of Pennsylvania; Filadelphia; Pennsylvania; USA
2
Kazan Federal University
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#thrombosis#contraction#thrombolysis
189
Biological systems at the supracellular level: hemostasis, immunity and neurobiology

A mechanistic model for thromboelastography

Suguru Mrudula
Suguru Mrudula
1
Chemical Engineering, Indian Institute of Technology Hyderabad, INDIA
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Sudharshan Kannapadi
Sudharshan Kannapadi
1
Chemical Engineering, National Institute of Technology Tiruchirappalli, INDIA
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Mohan Anand
Mohan Anand
Сorrespondence:[email protected]
1
Chemical Engineering, Indian Institute of Technology Hyderabad, INDIA
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,
James Antaki
James Antaki
1
Meinig School of Biomedical Engineering, Cornell University, USA
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#thromboelastography#mathematical modeling#hemostasis
270
Biological systems at the supracellular level: hemostasis, immunity and neurobiology

Corticotropin-releasing factor (CRF) as a mediator of pain response to stressor: involvement of CRF receptors of subtype 2, opioid receptors and glucocorticoid receptors in CRF-induced analgesic effect in rats

Natalia Yarushkina
Natalia Yarushkina
Сorrespondence:[email protected]
1
Pavlov Institute of Physiology, Russian Academy of Sciences
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Ludmila Filaretova
Ludmila Filaretova
1
Pavlov Institute of Physiology, Russian Academy of Sciences
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#stress#glucocorticoid receptors#opioid receptors#analgesia
207
Genomics and Bioinformatics

Mechanical equilibrium of the cell nucleus and its potential role in regulation of chromatin structure

Artem Efremov
Artem Efremov
Сorrespondence:[email protected]
1
Institute of Systems and Physical Biology, Shenzhen Bay Laboratories, Shenzhen, China, 5181132
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#DNA packaging#nucleus#computational modeling
253
Biological systems at the supracellular level: hemostasis, immunity and neurobiology

Mechanics of cell interaction, numerical modelling

Raimondas Jasevičius
Raimondas Jasevičius
Сorrespondence:[email protected]
1
Vilnius Gediminas Technical University; Vilnus; Lithuania
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#numerical modelling#cell interaction#biophysics
200
Methodological issues in systems biology and systems physiology

Reimagining the interaction between stress-induced glucocorticoids and gastric ulceration: the importance of a methodological approach

Ludmila Filaretova
Ludmila Filaretova
Сorrespondence:[email protected]
1
Pavlov Institute of Physiology, Russian Academy of Sciences
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#stress#glucocorticoid receptors#rodent models
180
Cell division and molecular motors

Structure of super-relaxed myosin heads in relaxed muscle

Natalia Koubassova
Natalia Koubassova
Сorrespondence:[email protected]
1
Institute of Mechanics, Lomonosov Moscow State University
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Andrey Tsaturyan
Andrey Tsaturyan
1
Institute of Mechanics, Lomonosov Moscow State University
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,
Roger Craig
Roger Craig
1
University of Massachusetts Medical School
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,
Raúl Padrón
Raúl Padrón
1
University of Massachusetts Medical School
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#myosin#cryo-electron microscopy#mathematical modeling#muscle contraction
178
Biological systems at the supracellular level: hemostasis, immunity and neurobiology

Влияние гепарина на формирование и заживление язв желудка у крыс

Denis Sahno
Denis Sahno
Сorrespondence:[email protected]
1
Pavlov Institute of Physiology, Russian Academy of Sciences
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,
Alexey Efimov
Alexey Efimov
1
North-Western State Medical University named after I.I. Mechnikov
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Badri Sigua
Badri Sigua
1
North-Western State Medical University named after I.I. Mechnikov
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Ludmila Filaretova
Ludmila Filaretova
1
Pavlov Institute of Physiology, Russian Academy of Sciences
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#heparin#rodent models#inflammation
217
Cell division and molecular motors

Role of tropomyosin dynamics in regulation of cardiac muscle in health and disease

Andrey Tsaturyan
Andrey Tsaturyan
Сorrespondence:[email protected]
1
Institute of Mechanics, Lomonosov Moscow State University
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Natalia Koubassova
Natalia Koubassova
1
Institute of Mechanics, Lomonosov Moscow State University
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,
Alexander Matyushenko
Alexander Matyushenko
1
The Research Centre of Biotechnology, the Russian Academy of Sciences
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Dmitrii Levitsky
Dmitrii Levitsky
1
The Research Centre of Biotechnology, the Russian Academy of Sciences
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,
Galina Kopylova
Galina Kopylova
1
Institute of Immunology and Physiology, Ural Branch of the Russian Academy of Sciences
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#tropomyosin#muscle contraction#mathematical modeling
207
Biological systems at the supracellular level: hemostasis, immunity and neurobiology

Oxidation-induced modifications of the blood coagulation factor XIII (FXIII) at the different stages of its activation identified by mass spectrometry

Alexandra Vasilyeva
Alexandra Vasilyeva
Сorrespondence:[email protected]
1
N.M. Emanuel Institute of Biochemical Physics RAS (IBCP RAS), 119334, Kosygina 4, Moscow, Russian Federation
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,
Lyubov Yurina
Lyubov Yurina
1
N.M. Emanuel Institute of Biochemical Physics RAS (IBCP RAS), 119334, Kosygina 4, Moscow, Russian Federation
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,
Daniela Azarova
Daniela Azarova
1
N.M. Emanuel Institute of Biochemical Physics RAS (IBCP RAS), 119334, Kosygina 4, Moscow, Russian Federation
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Alexey Kononikhin
Alexey Kononikhin
1
V.L. Talrose Institute for Energy Problems of Chemical Physics, N.N. Semenov Federal Center of Chemical Physics, Russian Academy of Sciences, Chernogolovka, Moscow region, 142432, Russia
2
Moscow Institute of Physics and Technology, Dolgoprudny, Russia
3
N.M. Emanuel Institute of Biochemical Physics RAS (IBCP RAS), 119334, Kosygina 4, Moscow, Russian Federation
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Mark Rosenfeld
Mark Rosenfeld
1
N.M. Emanuel Institute of Biochemical Physics RAS (IBCP RAS), 119334, Kosygina 4, Moscow, Russian Federation
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#coagulation#FXIII#mass spectrometry
207
Methodological issues in biophysics

How does viscosity help (!) the dynamics of spatial self-organization of molecular and supramolecular structures?

Konstantin Shaitan
Konstantin Shaitan
Сorrespondence:[email protected]
1
Biology Faculty, Moscow State University
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#macromolecular complexes#protein conformation#molecular mechanics
161
Methodological issues in systems biology and systems physiology

Лиганды PI3-киназы LY294002, LY303511 и PI828 блокируют сопряжение 5-HT2C рецептора с мобилизацией Ca2+ независимым от PI3-киназы образом

Ekaterina Dymova
Ekaterina Dymova
Сorrespondence:[email protected]
1
Institute of Cell Biophysics of the Russian Academy of Sciences
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,
Evgenia Voronova
Evgenia Voronova
1
Institute of Cell Biophysics of the Russian Academy of Sciences
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Polina Kotova
Polina Kotova
1
Institute of Cell Biophysics of the Russian Academy of Sciences
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#intracellular signaling#phosphoinositides#low-molecular inhibitors
218
Cell division and molecular motors

AED Peptide stimulates human stem cell differentiation into dermal fibroblasts

Natalia Linkova
Natalia Linkova
Сorrespondence:[email protected]
1
Saint Petersburg Institute of Bioregulation and Gerontology
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Ekaterina Gutop
Ekaterina Gutop
1
Saint Petersburg Institute of Bioregulation and Gerontology
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Vladimir Khavinson
Vladimir Khavinson
1
Saint Petersburg Institute of Bioregulation and Gerontology
2
Pavlov Institute of Physiology, Russian Academy of Sciences
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,
Natalia Fridman
Natalia Fridman
1
Saint Petersburg Institute of Bioregulation and Gerontology
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,
Karl Attieh
Karl Attieh
1
Medical Center «Dermapro» Beirut, Lebanon
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#fibroblasts#immunoflurescence microscopy#stem cells
234
Cell division and molecular motors

KE and KED peptides regulate PARP and SIRT gene expression during replicative and stationary human mesenchymal stem cells ageing

Gregory Shilovsky
Gregory Shilovsky
1
Belozersky Institute of Physical and Chemical Biology, Lomonosov Moscow State University, Moscow, Russia
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,
Vasily Ashapkin
Vasily Ashapkin
1
Belozersky Institute of Physical and Chemical Biology, Lomonosov Moscow State University, Moscow, Russia
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Natalia Linkova
Natalia Linkova
Сorrespondence:[email protected]
1
Saint Petersburg Institute of Bioregulation and Gerontology
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Vladimir Khavinson
Vladimir Khavinson
1
Saint Petersburg Institute of Bioregulation and Gerontology
2
Pavlov Institute of Physiology, Russian Academy of Sciences
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Boris Vanuyshin
Boris Vanuyshin
1
Belozersky Institute of Physical and Chemical Biology, Lomonosov Moscow State University, Moscow, Russia
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#stem cells#gene expression#ageing
166
Methodological issues in biophysics

Euler arches and Duffing oscillators a few nanometers in size

Vladik Avetisov
Vladik Avetisov
Сorrespondence:[email protected]
1
N. N. Semenov Federal Research Center of Chemical Physics RAS
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#numerical modelling#molecular motors#forces#molecular dynamics
195
Methodological issues in biophysics

Platelet hemostasis reactions are tightly regulated by temperature

Igor Mindukshev
Igor Mindukshev
Сorrespondence:[email protected]
1
Sechenov Institute of Evolutionary Physiology and Biochemistry, RAS
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,
Ekaterina Fock
Ekaterina Fock
1
Sechenov Institute of Evolutionary Physiology and Biochemistry, RAS
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,
Irina Dobrylko
Irina Dobrylko
1
Sechenov Institute of Evolutionary Physiology and Biochemistry, RAS
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Vladimir Ostashov
Vladimir Ostashov
1
Saint-Petersburg State Institute of Technology
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Stepan Gambaryan
Stepan Gambaryan
1
Sechenov Institute of Evolutionary Physiology and Biochemistry, RAS
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#hemostasis#platelets#platelet intracellular signaling
198
Cellular metabolism and energy

Experimental anticancer compound TIC10 induces transformation of BT474 human breast cancer cells to stable stress-state

Artem Mishukov
Artem Mishukov
Сorrespondence:[email protected]
1
Lomonosov Moscow State University
2
Institute of Theoretical and Experimental Biophysics, Russian Academy of Sciences
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Irina Odinokova
Irina Odinokova
1
Institute of Theoretical and Experimental Biophysics, Russian Academy of Sciences
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,
Ekaterina Mndlyan
Ekaterina Mndlyan
1
Institute of Theoretical and Experimental Biophysics, Russian Academy of Sciences
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Ekhson Holmuhamedov
Ekhson Holmuhamedov
1
Institute of Theoretical and Experimental Biophysics, Russian Academy of Sciences
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#cancer#fluorescent microscopy#chemotherapy
262
Cell division and molecular motors

Mechanisms of microtubule dynamic instability examined with Monte-Carlo simulations and in vitro reconstitution experiments

Nikita Gudimchuk
Nikita Gudimchuk
Nikita Gudimchuk
Сorrespondence:[email protected]
1
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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Fazly Ataullakhanov
Fazly Ataullakhanov
Fazly Ataullakhanov
1
Lomonosov Moscow State University, Physics Faculty 119991, Leninskiye Gory 1-2, Moscow, Russia
2
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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Vadim V. Mustyatsa
Vadim V. Mustyatsa
1
Lomonosov Moscow State University, Physics Faculty 119991, Leninskiye Gory 1-2, Moscow, Russia
2
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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Alexandr V. Zaitsev
Alexandr V. Zaitsev
1
Lomonosov Moscow State University, Physics Faculty 119991, Leninskiye Gory 1-2, Moscow, Russia
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Mikhail N. Anisimov
Mikhail N. Anisimov
1
Lomonosov Moscow State University, Physics Faculty 119991, Leninskiye Gory 1-2, Moscow, Russia
2
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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Veronika Alexandrova
Veronika Alexandrova
Veronika Alexandrova
1
Lomonosov Moscow State University, Physics Faculty 119991, Leninskiye Gory 1-2, Moscow, Russia
2
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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#microtubules#numerical modelling#tubulin
188
Cell division and molecular motors

Permitted and restricted steps of human kinetochore assembly in mitotic cell extracts

Ekaterina Tarasovetc
Ekaterina Tarasovetc
Сorrespondence:[email protected]
1
Department of Physiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA, 19104.
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Ekaterina Grishchuk
Ekaterina Grishchuk
1
Department of Physiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA, 19104.
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#mitosis#kinetochore#microtubules
199
Methodological issues in systems biology and systems physiology

Processes in photosynthetic membrane as an object of systems biology

Galina Riznichenko
Galina Riznichenko
Сorrespondence:[email protected]
1
Lomonosov Moscow State University
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Anna Abaturova
Anna Abaturova
1
Lomonosov Moscow State University
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Taras Antal
Taras Antal
1
Pskov National University
2
Lomonosov Moscow State University
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Natalya Belyaeva
Natalya Belyaeva
1
Lomonosov Moscow State University
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Alexandra Dyakonova
Alexandra Dyakonova
1
Lomonosov Moscow State University
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Sergey Khruschev
Sergey Khruschev
1
Lomonosov Moscow State University
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Ilia Kovalenko
Ilia Kovalenko
1
Peoples’ Friendship University of Russia (RUDN University) Moscow 117198, Russia
2
Scientific and Technological Center of Unique Instrumentation of the Russian Academy of Sciences, Moscow 117342, Russia
3
Institute of Physics and Mathematics, Astrakhan State University, Astrakhan 414056, Russia
4
Lomonosov Moscow State University
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Alexey Maslakov
Alexey Maslakov
1
Lomonosov Moscow State University
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Tetyana Plusnina
Tetyana Plusnina
1
Lomonosov Moscow State University
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Vladimir Fedorov
Vladimir Fedorov
1
Lomonosov Moscow State University
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Andrey Rubin
Andrey Rubin
1
Lomonosov Moscow State University
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#photosynthesis#membrane#mathematical modeling
213
Biological systems at the supracellular level: hemostasis, immunity and neurobiology

In silico modelling of hemostatic response: challenges and perspectives

Dmitry Nechipurenko
Dmitry Nechipurenko
Dmitry Nechipurenko
Сorrespondence:[email protected]
1
Lomonosov Moscow State University, Physics Faculty 119991, Leninskiye Gory 1-2, Moscow, Russia
2
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
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Anastasia Masalceva
Anastasia Masalceva
1
Lomonosov Moscow State University, Physics Faculty 119991, Leninskiye Gory 1-2, Moscow, Russia
2
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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Andrei Megalinskii
Andrei Megalinskii
1
Lomonosov Moscow State University, Physics Faculty 119991, Leninskiye Gory 1-2, Moscow, Russia
2
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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#hemostasis#computational modeling#thrombus formation#systematic review
242
Cellular metabolism and energy

Novel genetically encoded tools for compartment-specific manipulation of NADH/NAD+ and NADPH/NADP+ ratios in living cells

Valentin Cracan
Valentin Cracan
Сorrespondence:[email protected]
1
The Scripps Research Institute
2
Scintillon Institute
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#genetic tools#redox metabolism#electron transport chain
206
Methodological issues in systems biology and systems physiology

Application of machine learning technologies in a non-invasive sensor system for diagnostics of a human functional state

Anna Zaitceva
Anna Zaitceva
Сorrespondence:[email protected]
1
Institute for Analytical Instrumentation of the Russian Academy of Sciences
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Sergey Avdyuschenko
Sergey Avdyuschenko
1
Military Medical Academy named after S.M. Kirov Ministry of Defense of the Russian Federation
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Maria Mazing
Maria Mazing
1
Institute for Analytical Instrumentation of the Russian Academy of Sciences
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,
Arina Cherednikova
Arina Cherednikova
1
Peter the Great St. Petersburg Polytechnic University
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#machine learning technologies#non-invasive diagnostics
209
Biological systems at the supracellular level: hemostasis, immunity and neurobiology

KED peptide prevents synaptic contacts elimination of hippocampus neurons in an in vivo Alzheimer's disease model

Anastasiia Ilina
Anastasiia Ilina
Сorrespondence:[email protected]
1
Saint Petersburg Institute of Bioregulation and Gerontology
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Nina Kraskovskaya
Nina Kraskovskaya
1
Peter the Great St. Petersburg Polytechnic University
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Natalia Linkova
Natalia Linkova
1
Saint Petersburg Institute of Bioregulation and Gerontology
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Vladimir Khavinson
Vladimir Khavinson
1
Saint Petersburg Institute of Bioregulation and Gerontology
2
Pavlov Institute of Physiology, Russian Academy of Sciences
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#neuron#Alzheimer's disease#murine models#drug development
182
Cellular metabolism and energy

Calcium oscillations and autowaves in cells

Valery Zinchenko
Valery Zinchenko
Сorrespondence:[email protected]
1
Institute of Cell Biophysics of the Russian Academy of Sciences
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Aleksey Berezhnov
Aleksey Berezhnov
1
Institute of Cell Biophysics of the Russian Academy of Sciences
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#calcium signaling#autowaves#fluorescent microscopy#neuron
219
Cellular metabolism and energy

Thermodynamic and structural characteristics of cryoprotective media for cryopreservation of cells

Ann Ivanova
Ann Ivanova
Сorrespondence:[email protected]
1
Lomonosov Moscow State University
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Ekaterina Simonenko
Ekaterina Simonenko
1
Lomonosov Moscow State University
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Alexander Efanov
Alexander Efanov
1
CFEL,DESY
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,
Anna Mironova
Anna Mironova
1
IVF Clinics "AltraVita"
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#cryoconservation#spermatozoa#cell preservation
211
Biological systems at the supracellular level: hemostasis, immunity and neurobiology

Numerical and qualitative investigation of the mathematical model of blood coagulation with membrane reactions

Anna Andreeva
Anna Andreeva
1
Moscow Institute of Physics and Technology, Dolgoprudny, Russia
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,
Anand Mohan
Anand Mohan
1
Chemical Engineering, Indian Institute of Technology Hyderabad, INDIA
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Aleksey Lobanov
Aleksey Lobanov
Сorrespondence:[email protected]
1
Moscow Institute of Physics and Technology, Dolgoprudny, Russia
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Andrey Nikolaev
Andrey Nikolaev
1
N. N. Semenov Federal Research Center of Chemical Physics RAS
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,
Mikhail Panteleev
Mikhail Panteleev
Mikhail Panteleev
MSU, Faculty of physics
1
Moscow Institute of Physics and Technology, Dolgoprudny, Russia
2
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
3
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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#mathematical modeling#coagulation#membrane reactions
212
Practical applications of cell biophysics: erythrocytes as carriers of drugs

Mathematical modeling of the RBC-bioreactors

Evgenii Protasov
Evgenii Protasov
Сorrespondence:[email protected]
1
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
2
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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Larisa Koleva
Larisa Koleva
1
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
2
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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Elizaveta Bovt
Elizaveta Bovt
1
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
2
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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Elena Sinauridze
Elena Sinauridze
1
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
2
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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,
Fazly Ataullakhanov
Fazly Ataullakhanov
Fazly Ataullakhanov
1
Lomonosov Moscow State University, Physics Faculty 119991, Leninskiye Gory 1-2, Moscow, Russia
2
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
3
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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#mathematical modeling#red blood cells#drug-delivery
244
Biological systems at the supracellular level: hemostasis, immunity and neurobiology

The role of single nucleotide polymorphisms (SNPs) within genes of platelet glycoprotein receptors and blood-coagulation factors II, V and XIII on coagulation and embolic risk in patients with infective endocarditis

Nargiz Safarova
Nargiz Safarova
Сorrespondence:[email protected]
1
Lomonosov Moscow State University
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Alexandra Pisaryuk
Alexandra Pisaryuk
1
V. V. Vinogradov’s City Clinical Hospital
2
Peoples’ Friendship University of Russia (RUDN University) Moscow 117198, Russia
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,
Alexander Balatsky
Alexander Balatsky
1
Lomonosov Moscow State University
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,
Ekaterina Koltsova
Ekaterina Koltsova
1
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
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Nikita Povolyaev
Nikita Povolyaev
1
V. V. Vinogradov’s City Clinical Hospital
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,
Zhanna Kobalava
Zhanna Kobalava
1
Peoples’ Friendship University of Russia (RUDN University) Moscow 117198, Russia
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#coagulation#single nucleotide polymorphisms#infective endocarditis#platelets#hemostasis
202
Cellular metabolism and energy

Melatonin effect on oxidative stress dynamics and DNA fragmentation in human spermatozoa

Evgeni Bochkov
Evgeni Bochkov
Сorrespondence:[email protected]
1
Lomonosov Moscow State University, Physics Faculty 119991, Leninskiye Gory 1-2, Moscow, Russia
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Ekaterina Simonenko
Ekaterina Simonenko
1
Lomonosov Moscow State University, Physics Faculty 119991, Leninskiye Gory 1-2, Moscow, Russia
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,
Anna Mironova
Anna Mironova
1
N.M. Emanuel Institute of Biochemical Physics RAS (IBCP RAS), 119334, Kosygina 4, Moscow, Russian Federation
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#oxidative stress#spermatozoa#hormones
213
Methodological issues in biophysics

Reversible aggregation and deformation of RBC as determining factors of blood fluidity control

Alexander Priezzhev
Alexander Priezzhev
Сorrespondence:[email protected]
1
Lomonosov Moscow State University, Physics Faculty 119991, Leninskiye Gory 1-2, Moscow, Russia
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Andrei Lugovtsov
Andrei Lugovtsov
1
Lomonosov Moscow State University, Physics Faculty 119991, Leninskiye Gory 1-2, Moscow, Russia
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Alexey Semenov
Alexey Semenov
1
Biology Faculty, Moscow State University
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Petr Ermolinskiy
Petr Ermolinskiy
1
Lomonosov Moscow State University, Physics Faculty 119991, Leninskiye Gory 1-2, Moscow, Russia
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#red blood cells#blood fluidity#RBC aggregometry#fibrinogen
233
Practical applications of cell biophysics: erythrocytes as carriers of drugs

Development of an automatic device for creating drug-loaded erythrocytes

Larisa Koleva
Larisa Koleva
Сorrespondence:[email protected]
1
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
2
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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,
Elizaveta Bovt
Elizaveta Bovt
1
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
2
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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,
Daria Borsakova
Daria Borsakova
1
Roche Diagnostics, Moscow, Russia
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,
Anna Suvorova
Anna Suvorova
1
Bauman University, Moscow, Russia
2
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
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Hacob Danielyan
Hacob Danielyan
1
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
2
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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,
Fazly Ataullakhanov
Fazly Ataullakhanov
Fazly Ataullakhanov
1
Lomonosov Moscow State University, Physics Faculty 119991, Leninskiye Gory 1-2, Moscow, Russia
2
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
3
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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#drug-delivery#red blood cells#L-asparaginase
226
Methodological issues in biophysics

Oxidative modification of fibrinogen molecules: structural and functional aspects

Lyubov Yurina
Lyubov Yurina
Сorrespondence:[email protected]
1
N.M. Emanuel Institute of Biochemical Physics RAS (IBCP RAS), 119334, Kosygina 4, Moscow, Russian Federation
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Alexandra Vasilyeva
Alexandra Vasilyeva
1
N.M. Emanuel Institute of Biochemical Physics RAS (IBCP RAS), 119334, Kosygina 4, Moscow, Russian Federation
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Vladislav Ivanov
Vladislav Ivanov
1
N.M. Emanuel Institute of Biochemical Physics RAS (IBCP RAS), 119334, Kosygina 4, Moscow, Russian Federation
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,
Alexey Kononikhin
Alexey Kononikhin
1
N.M. Emanuel Institute of Biochemical Physics RAS (IBCP RAS), 119334, Kosygina 4, Moscow, Russian Federation
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,
Mark Rosenfeld
Mark Rosenfeld
1
N.M. Emanuel Institute of Biochemical Physics RAS (IBCP RAS), 119334, Kosygina 4, Moscow, Russian Federation
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#blood plasma coagulation#oxidative stress#HPLC#fibrinogen
187
Biological systems at the supracellular level: hemostasis, immunity and neurobiology

Design of potential anti-aggregatory agents and their influence on human platelets activation

Olga Demina
Olga Demina
Сorrespondence:[email protected]
1
N.M. Emanuel Institute of Biochemical Physics RAS (IBCP RAS), 119334, Kosygina 4, Moscow, Russian Federation
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Sergei Varfolomeev
Sergei Varfolomeev
1
N.M. Emanuel Institute of Biochemical Physics RAS (IBCP RAS), 119334, Kosygina 4, Moscow, Russian Federation
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,
Yana Kotova
Yana Kotova
1
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
2
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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Nadezhda Podoplelova
Nadezhda Podoplelova
1
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
2
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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Mikhail Panteleev
Mikhail Panteleev
Mikhail Panteleev
MSU, Faculty of physics
1
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
2
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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Fazly Ataullakhanov
Fazly Ataullakhanov
Fazly Ataullakhanov
1
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
2
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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Andrey Khodonov
Andrey Khodonov
1
N.M. Emanuel Institute of Biochemical Physics RAS (IBCP RAS), 119334, Kosygina 4, Moscow, Russian Federation
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Elena Sinauridze
Elena Sinauridze
1
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
2
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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#platelet activation#aggregometry#mass spectrometry#NMR spectroscopy#low-molecular inhibitors#anti-platelet drugs
215
Cell division and molecular motors

Molecular dynamic model of NDC80 complex interaction with a microtubule

Ilya Kovalenko
Ilya Kovalenko
Сorrespondence:[email protected]
1
Lomonosov Moscow State University
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Ekaterina Kholina
Ekaterina Kholina
1
Lomonosov Moscow State University
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,
Vladimir Fedorov
Vladimir Fedorov
1
Lomonosov Moscow State University
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,
Philipp Orekhov
Philipp Orekhov
1
Lomonosov Moscow State University
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Nikita Gudimchuk
Nikita Gudimchuk
Nikita Gudimchuk
Сorrespondence:[email protected]
1
Lomonosov Moscow State University
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#molecular dynamics#microtubules#kinetochore
201
Cellular metabolism and energy

Virtual cell and theory of metabolic control

Victor Vitvitsky
Victor Vitvitsky
Сorrespondence:[email protected]
1
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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Michael Martinov
Michael Martinov
1
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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Fazly Ataullakhanov
Fazly Ataullakhanov
Fazly Ataullakhanov
1
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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#glycolysis#mathematical modeling#metabolism#metabolomics
176
Methodological issues in systems biology and systems physiology

Quantum docking

Vladimir Sulimov
Vladimir Sulimov
Сorrespondence:[email protected]
1
Dimonta, Ltd., Moscow 117186, Russia
2
Research Computing Center of Lomonosov Moscow State University
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Alexey Sulimov
Alexey Sulimov
1
Dimonta, Ltd., Moscow 117186, Russia
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,
Danil Kutov
Danil Kutov
1
Dimonta, Ltd., Moscow 117186, Russia
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#docking#force fields#computational modeling
237
Methodological issues in biophysics

Development of a track-etched membrane based method of the isolation of CTCs

Ivan Grebennik
Ivan Grebennik
Сorrespondence:[email protected]
1
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
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Olga Fedyanina
Olga Fedyanina
1
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
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Alexandra Filkova
Alexandra Filkova
1
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
2
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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Kirill Butov
Kirill Butov
1
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
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Sofia Kuznetsova
Sofia Kuznetsova
1
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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#circulating tumor cells#cell culture#breast cancer#cytology
181
Methodological issues in systems biology and systems physiology

Mathematical modeling of hemodynamics in the left atrium during atrial fibrillation

Sergejus Borodinas
Sergejus Borodinas
1
Vilnius Tech, Vilnius, Lithuania; Institute of Applied Mathematics, Vilnius University, Lithuania
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Kristina Kaulakytė
Kristina Kaulakytė
1
Institute of Applied Mathematics, Vilnius University, Lithuania
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,
Nikolajus Kozulinas
Nikolajus Kozulinas
1
Institute of Applied Mathematics, Vilnius University, Lithuania
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Grigory Panasenko
Grigory Panasenko
1
Institute Camille Jordan UMR CNRS 5208, University Jean Monnet, Saint-Etienne, France
2
Institute of Applied Mathematics, Vilnius University, Lithuania
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Konstantin Pileckas
Konstantin Pileckas
1
Institute of Applied Mathematics, Vilnius University, Lithuania
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#thrombosis#mathematical modeling
226
Methodological issues in systems biology and systems physiology

Overcoming kinase inhibitor resistance and oncogenic RAS signaling

Boris Kholodenko
Boris Kholodenko
Сorrespondence:
1
Department of Pharmacology, Yale University School of Medicine, New Haven, CT, USA
2
Systems Biology Ireland, University College Dublin, Belfield, Dublin, Ireland
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#cancer#kinase#drug development
197
Biological systems at the supracellular level: hemostasis, immunity and neurobiology

Construction of self-adaptive biomaterials surface with high blood compatibility

Qiang Shi
Qiang Shi
Сorrespondence:
1
University of Science and Technology of China, Hefei, Anhui, 230026, China
2
State Key Laboratory of Polymer Physics and Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, Jilin 130022, China
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Zehong Xiang
Zehong Xiang
1
University of Science and Technology of China, Hefei, Anhui, 230026, China
2
State Key Laboratory of Polymer Physics and Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, Jilin 130022, China
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Zhifang Ma
Zhifang Ma
1
State Key Laboratory of Polymer Physics and Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, Jilin 130022, China
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,
Xinghua Guan
Xinghua Guan
1
State Key Laboratory of Polymer Physics and Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, Jilin 130022, China
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Jinghua Yin
Jinghua Yin
1
State Key Laboratory of Polymer Physics and Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, Jilin 130022, China
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#self-adaptive#extracellular matrix#vascular implants#blood compatibility
195
Biological systems at the supracellular level: hemostasis, immunity and neurobiology

The influence of blood clotting on pulmonary circulation

Anastasiia Mozokhina
Anastasiia Mozokhina
1
Lomonosov Moscow State University, Moscow, 119991, Russia
2
Peoples' Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St, Moscow, 117198, Russia
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Anass Bouchnita
Anass Bouchnita
1
Mohammadia School of Engineering, Mohamed V University, Rabat, 10080, Morocco
2
Laboratoire de Biométrie et Biologie Evolutive (LBBE), UMR 5558 CNRS, University Lyon 1, Villeurbanne, 69622, France
3
Institut Camille Jordan, UMR 5208 CNRS, University Lyon 1, Villeurbanne, 69622, France
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Vitali Volpert
Vitali Volpert
1
INRIA, Team Dracula, INRIA Lyon La Doua, 69603 Villeurbanne, France
2
Peoples' Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St, Moscow, 117198, Russia
3
Institut Camille Jordan, UMR 5208 CNRS, University Lyon 1, Villeurbanne, 69622, France
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#mathematical modeling#thrombosis#pulmonary
239
Biological systems at the supracellular level: hemostasis, immunity and neurobiology

Modelling of blood clotting in aneurysm

Anass Bouchnita
Anass Bouchnita
1
Mohammadia School of Engineering, Mohamed V University, Rabat, 10080, Morocco
2
Laboratoire de Biométrie et Biologie Evolutive (LBBE), UMR 5558 CNRS, University Lyon 1, Villeurbanne, 69622, France
3
Institut Camille Jordan, UMR 5208 CNRS, University Lyon 1, Villeurbanne, 69622, France
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Alexey Belyaev
Alexey Belyaev
1
Lomonosov Moscow State University, Physics Faculty 119991, Leninskiye Gory 1-2, Moscow, Russia
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Vitaly Volpert
Vitaly Volpert
Сorrespondence:
1
INRIA, Team Dracula, INRIA Lyon La Doua, 69603 Villeurbanne, France
2
Peoples' Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St, Moscow, 117198, Russia
3
Institut Camille Jordan, UMR 5208 CNRS, University Lyon 1, Villeurbanne, 69622, France
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#mathematical modeling#coagulation#thrombosis#aneurysm
204
Biological systems at the supracellular level: hemostasis, immunity and neurobiology

Simulation of the coagulation system: Tool or Toy ?

Coen Hemker
Coen Hemker
Сorrespondence:
1
Cardiovascular Research Institute Maastricht University & Centrum Wiskunde & Informatica University of Amsterdam
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P. Hemker
P. Hemker
1
Cardiovascular Research Institute Maastricht University & Centrum Wiskunde & Informatica University of Amsterdam
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#hemostasis#mathematical modeling
200
Biological systems at the supracellular level: hemostasis, immunity and neurobiology

Spatial effects in the complement system

Anna Filippova
Anna Filippova
1
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
2
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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Soslan Shakhidzhanov
Soslan Shakhidzhanov
1
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
2
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
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Fazly Ataullakhanov
Fazly Ataullakhanov
Fazly Ataullakhanov
1
Center For Theoretical Problems of Physico-Chemical Pharmacology RAS, 109029, Srednyaya Kalitnikovskaya 30, Moscow, Russia
2
Dmitriy Rogachev National Medical Research Center of Pediatric Hematology, Oncology Immunology Ministry of Healthcare of Russian Federation, 117997, Samory Machela 1, Moscow Russia
3
Lomonosov Moscow State University, Physics Faculty 119991, Leninskiye Gory 1-2, Moscow, Russia
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#immunity#complement system#mathematical modeling
245
Biological systems at the supracellular level: hemostasis, immunity and neurobiology

Synergism between Anticoagulation and Phototherapy to Prevent the Thrombotic Complications

Zhifang Ma
Zhifang Ma
1
University of Science and Technology of China, Hefei, Anhui, 230026, China
2
State Key Laboratory of Polymer Physics and Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, Jilin 130022, China
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#coagulation#photobiology
229